This idea has been merged into another idea. To comment or vote on this idea, please visit S1-I-416 When matching in the banking module, show transactions that are greater than the amount being matched.
At the moment, when our bank deducts charges from a payment from a customer, this creates a shortfall against the invoice they are paying. At the moment the only way to deal with this is to enter an other payment for the bank charges, and then raise a credit note to write off the shortfall. This is stupidly long-winded, and you should be able to easily deal with the bank charges when allocating the payment on the customer account.