There is currently no workaround for approval routing of AP bills with multiple departments. The options are either A. use only one department on AP bills or B. do not route any AP bills for approval. If you use AP approval routing and attempt to submit a bill with multiple departments, an error message appears. The ability to select a dominant department for approval routing or bypass the approval routing all together (either at vendor level or by admin) would be an efficient solution for these bills as well as other bills that may not require approval routing.
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